Added USDA DB gem

2016-01-22 17:46:28 -06:00 · 2016-01-22 17:46:28 -06:00 · cc58f36459
commit cc58f36459
parent f434900291
11 changed files with 244 additions and 1 deletions
--- a/2
+++ b/2
@ -23,6 +23,8 @@ gem 'unitwise', '~> 2.0.0'
 # Use ActiveModel has_secure_password
 gem 'bcrypt', '~> 3.1.7'

+gem 'usda-nutrient-database', path: '/Users/delbert/Development/usda-nutrient-database-fork'
+
 # Use Unicorn as the app server
 # gem 'unicorn'

--- a/Gemfile.lock
+++ b/Gemfile.lock
@ -1,3 +1,12 @@
+PATH
+  remote: /Users/delbert/Development/usda-nutrient-database-fork
+  specs:
+    usda-nutrient-database (1.3.0)
+      activerecord (>= 4.0.0)
+      activerecord-import (~> 0.10.0)
+      faraday
+      rubyzip
+
 GEM
  remote: https://rubygems.org/
  specs:
@ -30,6 +39,8 @@ GEM
      activemodel (= 4.2.5)
      activesupport (= 4.2.5)
      arel (~> 6.0)
+    activerecord-import (0.10.0)
+      activerecord (>= 3.0)
    activesupport (4.2.5)
      i18n (~> 0.7)
      json (~> 1.7, >= 1.7.7)
@ -68,6 +79,8 @@ GEM
    factory_girl_rails (4.5.0)
      factory_girl (~> 4.5.0)
      railties (>= 3.0.0)
+    faraday (0.9.2)
+      multipart-post (>= 1.2, < 3)
    globalid (0.3.6)
      activesupport (>= 4.1.0)
    i18n (0.7.0)
@ -91,6 +104,7 @@ GEM
    mini_portile2 (2.0.0)
    minitest (5.8.3)
    multi_json (1.11.2)
+    multipart-post (2.0.0)
    mysql2 (0.3.20)
    nokogiri (1.6.7.1)
      mini_portile2 (~> 2.0.0.rc2)
@ -142,6 +156,7 @@ GEM
      rspec-mocks (~> 3.4.0)
      rspec-support (~> 3.4.0)
    rspec-support (3.4.1)
+    rubyzip (1.1.7)
    sass (3.4.21)
    sass-rails (5.0.4)
      railties (>= 4.0.0, < 5.0)
@ -203,6 +218,7 @@ DEPENDENCIES
  turbolinks
  uglifier (>= 1.3.0)
  unitwise (~> 2.0.0)
+  usda-nutrient-database!
  web-console (~> 2.0)

 BUNDLED WITH
--- a/db/migrate/20160122223816_create_usda_food_groups.usda_nutrient_database_engine.rb
+++ b/db/migrate/20160122223816_create_usda_food_groups.usda_nutrient_database_engine.rb
@ -0,0 +1,9 @@
+# This migration comes from usda_nutrient_database_engine (originally 1)
+class CreateUsdaFoodGroups < ActiveRecord::Migration
+  def change
+    create_table :usda_food_groups, id: false, primary_key: :code do |t|
+      t.string  :code, null: false, index: true, uniq: true
+      t.string  :description, null: false
+    end
+  end
+end
--- a/db/migrate/20160122223817_create_usda_foods.usda_nutrient_database_engine.rb
+++ b/db/migrate/20160122223817_create_usda_foods.usda_nutrient_database_engine.rb
@ -0,0 +1,20 @@
+# This migration comes from usda_nutrient_database_engine (originally 2)
+class CreateUsdaFoods < ActiveRecord::Migration
+  def change
+    create_table :usda_foods, id: false, primary_key: :nutrient_databank_number do |t|
+      t.string  :nutrient_databank_number, null: false, index: true
+      t.string  :food_group_code, index: true
+      t.string  :long_description, null: false
+      t.string  :short_description, null: false
+      t.string  :common_names
+      t.string  :manufacturer_name
+      t.boolean :survey
+      t.string  :refuse_description
+      t.integer :percentage_refuse
+      t.float   :nitrogen_factor
+      t.float   :protein_factor
+      t.float   :fat_factor
+      t.float   :carbohydrate_factor
+    end
+  end
+end
--- a/db/migrate/20160122223818_create_usda_foods_nutrients.usda_nutrient_database_engine.rb
+++ b/db/migrate/20160122223818_create_usda_foods_nutrients.usda_nutrient_database_engine.rb
@ -0,0 +1,29 @@
+# This migration comes from usda_nutrient_database_engine (originally 3)
+class CreateUsdaFoodsNutrients < ActiveRecord::Migration
+  def change
+    create_table :usda_foods_nutrients do |t|
+      t.string  :nutrient_databank_number, null: false
+      t.string  :nutrient_number, null: false
+      t.float   :nutrient_value, null: false
+      t.integer :num_data_points, null: false
+      t.float   :standard_error
+      t.string  :src_code, null: false
+      t.string  :derivation_code
+      t.string  :ref_nutrient_databank_number
+      t.boolean :add_nutrient_mark
+      t.integer :num_studies
+      t.float   :min
+      t.float   :max
+      t.integer :degrees_of_freedom
+      t.float   :lower_error_bound
+      t.float   :upper_error_bound
+      t.string  :statistical_comments
+      t.string  :add_mod_date
+      t.string  :confidence_code
+    end
+
+    add_index :usda_foods_nutrients,
+      [:nutrient_databank_number, :nutrient_number],
+      name: 'foods_nutrients_index'
+  end
+end
--- a/db/migrate/20160122223819_create_usda_nutrients.usda_nutrient_database_engine.rb
+++ b/db/migrate/20160122223819_create_usda_nutrients.usda_nutrient_database_engine.rb
@ -0,0 +1,13 @@
+# This migration comes from usda_nutrient_database_engine (originally 4)
+class CreateUsdaNutrients < ActiveRecord::Migration
+  def change
+    create_table :usda_nutrients, id: false, primary_key: :nutrient_number do |t|
+      t.string  :nutrient_number, null: false, index: true
+      t.string  :units, null: false
+      t.string  :tagname
+      t.string  :nutrient_description, null: false
+      t.string  :number_decimal_places, null: false
+      t.integer :sort_record_order, null: false
+    end
+  end
+end
--- a/db/migrate/20160122223820_create_usda_weights.usda_nutrient_database_engine.rb
+++ b/db/migrate/20160122223820_create_usda_weights.usda_nutrient_database_engine.rb
@ -0,0 +1,14 @@
+# This migration comes from usda_nutrient_database_engine (originally 5)
+class CreateUsdaWeights < ActiveRecord::Migration
+  def change
+    create_table :usda_weights do |t|
+      t.string  :nutrient_databank_number, null: false, index: true
+      t.string  :sequence_number, null: false
+      t.float   :amount, null: false
+      t.string  :measurement_description, null: false
+      t.float   :gram_weight, null: false
+      t.integer :num_data_points
+      t.float   :standard_deviation
+    end
+  end
+end
--- a/db/migrate/20160122223821_create_usda_footnotes.usda_nutrient_database_engine.rb
+++ b/db/migrate/20160122223821_create_usda_footnotes.usda_nutrient_database_engine.rb
@ -0,0 +1,12 @@
+# This migration comes from usda_nutrient_database_engine (originally 6)
+class CreateUsdaFootnotes < ActiveRecord::Migration
+  def change
+    create_table :usda_footnotes do |t|
+      t.string :nutrient_databank_number, null: false, index: true
+      t.string :footnote_number, null: false, index: true
+      t.string :footnote_type, null: false, index: true
+      t.string :nutrient_number, index: true
+      t.string :footnote_text, null: false
+    end
+  end
+end
--- a/db/migrate/20160122223822_create_usda_source_codes.usda_nutrient_database_engine.rb
+++ b/db/migrate/20160122223822_create_usda_source_codes.usda_nutrient_database_engine.rb
@ -0,0 +1,9 @@
+# This migration comes from usda_nutrient_database_engine (originally 7)
+class CreateUsdaSourceCodes < ActiveRecord::Migration
+  def change
+    create_table :usda_source_codes do |t|
+      t.string :code, null: false, index: true
+      t.string :description, null: false
+    end
+  end
+end
--- a/db/migrate/20160122223823_add_timestamps_to_all_tables.usda_nutrient_database_engine.rb
+++ b/db/migrate/20160122223823_add_timestamps_to_all_tables.usda_nutrient_database_engine.rb
@ -0,0 +1,13 @@
+# This migration comes from usda_nutrient_database_engine (originally 8)
+class AddTimestampsToAllTables < ActiveRecord::Migration
+  def change
+    [
+      :usda_food_groups, :usda_foods, :usda_foods_nutrients,
+      :usda_weights, :usda_footnotes, :usda_source_codes,
+      :usda_nutrients
+    ].each do |table_name|
+      add_column table_name, :created_at, :datetime
+      add_column table_name, :updated_at, :datetime
+    end
+  end
+end
--- a/db/schema.rb
+++ b/db/schema.rb
@ -11,7 +11,7 @@
 #
 # It's strongly recommended that you check this file into your version control system.

-ActiveRecord::Schema.define(version: 20160119212055) do
+ActiveRecord::Schema.define(version: 20160122223823) do

  create_table "ingredients", force: :cascade do |t|
    t.string   "name"
@ -58,6 +58,112 @@ ActiveRecord::Schema.define(version: 20160119212055) do
    t.integer  "user_id"
  end

+  create_table "usda_food_groups", id: false, force: :cascade do |t|
+    t.string   "code",        null: false
+    t.string   "description", null: false
+    t.datetime "created_at"
+    t.datetime "updated_at"
+  end
+
+  add_index "usda_food_groups", ["code"], name: "index_usda_food_groups_on_code"
+
+  create_table "usda_foods", id: false, force: :cascade do |t|
+    t.string   "nutrient_databank_number", null: false
+    t.string   "food_group_code"
+    t.string   "long_description",         null: false
+    t.string   "short_description",        null: false
+    t.string   "common_names"
+    t.string   "manufacturer_name"
+    t.boolean  "survey"
+    t.string   "refuse_description"
+    t.integer  "percentage_refuse"
+    t.float    "nitrogen_factor"
+    t.float    "protein_factor"
+    t.float    "fat_factor"
+    t.float    "carbohydrate_factor"
+    t.datetime "created_at"
+    t.datetime "updated_at"
+  end
+
+  add_index "usda_foods", ["food_group_code"], name: "index_usda_foods_on_food_group_code"
+  add_index "usda_foods", ["nutrient_databank_number"], name: "index_usda_foods_on_nutrient_databank_number"
+
+  create_table "usda_foods_nutrients", force: :cascade do |t|
+    t.string   "nutrient_databank_number",     null: false
+    t.string   "nutrient_number",              null: false
+    t.float    "nutrient_value",               null: false
+    t.integer  "num_data_points",              null: false
+    t.float    "standard_error"
+    t.string   "src_code",                     null: false
+    t.string   "derivation_code"
+    t.string   "ref_nutrient_databank_number"
+    t.boolean  "add_nutrient_mark"
+    t.integer  "num_studies"
+    t.float    "min"
+    t.float    "max"
+    t.integer  "degrees_of_freedom"
+    t.float    "lower_error_bound"
+    t.float    "upper_error_bound"
+    t.string   "statistical_comments"
+    t.string   "add_mod_date"
+    t.string   "confidence_code"
+    t.datetime "created_at"
+    t.datetime "updated_at"
+  end
+
+  add_index "usda_foods_nutrients", ["nutrient_databank_number", "nutrient_number"], name: "foods_nutrients_index"
+
+  create_table "usda_footnotes", force: :cascade do |t|
+    t.string   "nutrient_databank_number", null: false
+    t.string   "footnote_number",          null: false
+    t.string   "footnote_type",            null: false
+    t.string   "nutrient_number"
+    t.string   "footnote_text",            null: false
+    t.datetime "created_at"
+    t.datetime "updated_at"
+  end
+
+  add_index "usda_footnotes", ["footnote_number"], name: "index_usda_footnotes_on_footnote_number"
+  add_index "usda_footnotes", ["footnote_type"], name: "index_usda_footnotes_on_footnote_type"
+  add_index "usda_footnotes", ["nutrient_databank_number"], name: "index_usda_footnotes_on_nutrient_databank_number"
+  add_index "usda_footnotes", ["nutrient_number"], name: "index_usda_footnotes_on_nutrient_number"
+
+  create_table "usda_nutrients", id: false, force: :cascade do |t|
+    t.string   "nutrient_number",       null: false
+    t.string   "units",                 null: false
+    t.string   "tagname"
+    t.string   "nutrient_description",  null: false
+    t.string   "number_decimal_places", null: false
+    t.integer  "sort_record_order",     null: false
+    t.datetime "created_at"
+    t.datetime "updated_at"
+  end
+
+  add_index "usda_nutrients", ["nutrient_number"], name: "index_usda_nutrients_on_nutrient_number"
+
+  create_table "usda_source_codes", force: :cascade do |t|
+    t.string   "code",        null: false
+    t.string   "description", null: false
+    t.datetime "created_at"
+    t.datetime "updated_at"
+  end
+
+  add_index "usda_source_codes", ["code"], name: "index_usda_source_codes_on_code"
+
+  create_table "usda_weights", force: :cascade do |t|
+    t.string   "nutrient_databank_number", null: false
+    t.string   "sequence_number",          null: false
+    t.float    "amount",                   null: false
+    t.string   "measurement_description",  null: false
+    t.float    "gram_weight",              null: false
+    t.integer  "num_data_points"
+    t.float    "standard_deviation"
+    t.datetime "created_at"
+    t.datetime "updated_at"
+  end
+
+  add_index "usda_weights", ["nutrient_databank_number"], name: "index_usda_weights_on_nutrient_databank_number"
+
  create_table "users", force: :cascade do |t|
    t.string   "username"
    t.string   "email"